Package: MetaHD 0.1.6

MetaHD: A Multivariate Meta-Analysis Model for High-Dimensional Data

Performs multivariate meta-analysis for high-dimensional data to integrate and collectively analyse individual-level data from multiple studies, as well as to combine summary estimates. This approach accounts for correlation between outcomes, incorporates within- and between-study variability, handles missing values, and uses shrinkage estimation to accommodate high dimensionality. The 'MetaHD' R package provides access to our multivariate meta-analysis approach, along with a comprehensive suite of existing meta-analysis methods, including fixed-effects and random-effects models, Fisher's method, Stouffer's method, the weighted Z method, Lancaster's method, the weighted Fisher's method, and vote-counting approach. Visualisation tools are provided for interpreting and comparing results across methods, including Venn diagrams, UpSet plots, and ROC curves, heatmaps of pooled effect sizes and correlations among outcomes. A detailed vignette with example datasets and code for data preparation and analysis is available at <https://alyshadelivera.github.io/MetaHD_vignette/>.

Authors:Jayamini Liyanage [aut, cre], Alysha De Livera [aut], Luke Prendergast [aut]

MetaHD_0.1.6.tar.gz
MetaHD_0.1.6.zip(r-4.7-x86_64)MetaHD_0.1.6.zip(r-4.7-arm64)MetaHD_0.1.6.zip(r-4.6-x86_64)MetaHD_0.1.6.zip(r-4.6-arm64)MetaHD_0.1.6.zip(r-4.5-x86_64)
MetaHD_0.1.6.tgz(r-4.6-x86_64)MetaHD_0.1.6.tgz(r-4.6-arm64)MetaHD_0.1.6.tgz(r-4.5-x86_64)MetaHD_0.1.6.tgz(r-4.5-arm64)
MetaHD_0.1.6.tar.gz(r-4.7-arm64)MetaHD_0.1.6.tar.gz(r-4.7-x86_64)MetaHD_0.1.6.tar.gz(r-4.6-arm64)MetaHD_0.1.6.tar.gz(r-4.6-x86_64)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
MetaHD/json (API)

# Install 'MetaHD' in R:
install.packages('MetaHD', repos = c('https://jayaminicl.r-universe.dev', 'https://cloud.r-project.org'))
Uses libs:
  • openblas– Optimized BLAS
  • c++– GNU Standard C++ Library v3
Datasets:

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

openblascpp

1.30 score 1 scripts 482 downloads 8 exports 96 dependencies

Last updated from:f49e086e28. Checks:14 OK, 1 FAIL. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64OK235
linux-devel-x86_64OK285
source / vignettesOK237
linux-release-arm64OK267
linux-release-x86_64OK319
macos-release-arm64OK350
macos-release-x86_64OK696
macos-oldrel-arm64OK348
macos-oldrel-x86_64OK696
windows-devel-arm64OK569
windows-devel-x86_64OK321
windows-release-arm64OK538
windows-release-x86_64OK256
windows-oldrel-x86_64OK325
wasm-releaseFAIL162

Exports:estimateCorMatMetaHDMetaHDInputMetaHDpvalMetaHDResultplot_correlation_heatmapplot_dendrogramplot_effect_heatmap

Dependencies:BiobaseBiocGenericscirclizecliclueclustercodetoolscolorspaceComplexHeatmapcorpcorcpp11crayonDEoptimRdigestdoParalleldplyrdynamicTreeCutfarverforeachfuturefuture.applygenericsGetoptLongggplot2GlobalOptionsglobalsgluegridExtragtableIRangesisobanditeratorslabelinglatticelifecyclelistenvmagrittrMASSmathjaxrMatrixmatrixcalcMatrixModelsmatrixStatsmetadatmetaformetapmetapromnormtmultcompmulttestmutossmvtnormnlmenloptrnumDerivparallellypbapplypillarpkgconfigplotrixplyrpngpROCpurrrqqconfquantregR6rbibutilsRColorBrewerRcppRcppArmadilloRdpackrjsonrlangrobustbaseS4VectorsS7sandwichscalesshapesnSparseMstringistringrsurvivalTFisherTH.datatibbletidyrtidyselectUpSetRutf8vctrsviridisLitewithrzoo